To generate a results file that is compatible with this page, use a multiple sequence alignment with the tn93 fast pairwise distance calculator.
Once a pairwise distance file is created, use the hivnetworkcsv
script with the -A keyword argument to generate the tab-separated output compatible
with this page.
An example workflow is as follows:
./tn93 -t 0.03 pol.fasta > pairwise_distances.tn93.csv
hivnetworkcsv -i pairwise_distances.tn93.csv -f plain -A 0 > autotune_report.tsv